Mercurial > repos > jjohnson > defuse
view data_manager_conf.xml @ 11:b22f8634ff84 draft
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 23b94b5747c6956360cd2eca0a07a669929ea141-dirty
author | jjohnson |
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date | Sun, 17 Jan 2016 14:11:06 -0500 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="datamanager_create_reference.xml" id="data_manager_defuse_reference" > <data_table name="defuse_reference"> <!-- Defines a Data Table to be modified. --> <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="dbkey" /> <column name="name" /> <column name="path" output_ref="out_file" > <!-- The value of this column will be modified based upon data in "out_file". example value "phiX.fa" --> <move type="directory"> <!-- Moving a file from the extra files path of "out_file" --> <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/defuse</target> <!-- Target Location to store the file, directories are created as needed --> </move> <!-- datamanager_create_reference.py should have copied the defuse config file to the working directory. so if we put the ${dbkey}.config path in this column, defuse.xml can set the data_directory to this this directory. --> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/defuse/${value}.config</value_translation> <!-- Store this value in the final Data Table --> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>