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changeset 12:4fe2e80d4ae1 draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 0eb27e6896eacbb49a979fa4b34c31859e7fb1a8-dirty
author jjohnson
date Tue, 03 May 2016 15:18:11 -0400
parents b22f8634ff84
children 3a4876d01c7e
files defuse.xml tool_dependencies.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/defuse.xml	Sun Jan 17 14:11:06 2016 -0500
+++ b/defuse.xml	Tue May 03 15:18:11 2016 -0400
@@ -84,10 +84,10 @@
       <param name="reads_per_job" type="integer" value="1000000" optional="true" label="Number of reads for each job in split" />
     </when> <!-- full -->
   </conditional>  <!-- defuse_param -->
-  <param name="breakpoints_bam" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="Generate a Bam file for the fusions"/>
   <param name="keep_output" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="Save DeFuse working directory files" 
          help="The defuse output working directory can be helpful for determining errors that may have occurred during the run, 
                but they require considerable diskspace, and should be deleted and purged when no longer needed."/>
+  <param name="breakpoints_bam" type="boolean" checked="false" truevalue="yes" falsevalue="no" label="Generate a Bam file for the fusions"/>
   <param name="do_get_reads" type="boolean" checked="false" truevalue="yes" falsevalue="no" label="Run get_reads on each cluster"/>
  </inputs>
  <stdio>
--- a/tool_dependencies.xml	Sun Jan 17 14:11:06 2016 -0500
+++ b/tool_dependencies.xml	Tue May 03 15:18:11 2016 -0400
@@ -16,7 +16,7 @@
         <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="3.1.2">
-        <repository changeset_revision="c987143177d4" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="ada" version="2.0.3">
         <repository changeset_revision="f0e6af8a95e5" name="package_r_ada_2_0_3" owner="jjohnson" toolshed="https://toolshed.g2.bx.psu.edu" />