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comparison drep_compare.xml @ 2:cb2fc9f60381 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/drep commit eaae9983f0339c4624431f4f843e319f83814490"
author jjohnson
date Wed, 08 Jan 2020 13:01:03 -0500
parents 7e2debc267eb
children
comparison
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1:7e2debc267eb 2:cb2fc9f60381
22 <expand macro="select_outputs"/> 22 <expand macro="select_outputs"/>
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <expand macro="common_outputs" /> 25 <expand macro="common_outputs" />
26 </outputs> 26 </outputs>
27 <tests>
28 <expand macro="test_defaults_log">
29 <has_text text="dRep compare finished" />
30 </expand>
31 </tests>
27 <help><![CDATA[ 32 <help><![CDATA[
28 TODO: Fill in help.
29
30 usage: drep compare [-p PROCESSORS] [-d] [-h] [-ms MASH_SKETCH] 33 usage: drep compare [-p PROCESSORS] [-d] [-h] [-ms MASH_SKETCH]
31 [--S_algorithm {ANIn,goANI,ANImf,gANI}] 34 [--S_algorithm {ANIn,goANI,ANImf,gANI}]
32 [-n_PRESET {normal,tight}] [-pa P_ANI] [-sa S_ANI] 35 [-n_PRESET {normal,tight}] [-pa P_ANI] [-sa S_ANI]
33 [--SkipMash] [--SkipSecondary] [-nc COV_THRESH] 36 [--SkipMash] [--SkipSecondary] [-nc COV_THRESH]
34 [-cm {total,larger}] [--clusterAlg CLUSTERALG] [--run_tax] 37 [-cm {total,larger}] [--clusterAlg CLUSTERALG] [--run_tax]