Mercurial > repos > jjohnson > drep

diff drep_dereplicate.xml @ 1:7e2debc267eb draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/drep commit 3898da7c3685e3deca68c998abd7c7104740f5f3"
author jjohnson
date Mon, 06 Jan 2020 15:18:20 -0500
parents b59ae99e47d4
children cb2fc9f60381
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line diff
--- a/drep_dereplicate.xml	Mon Jan 06 11:11:06 2020 -0500
+++ b/drep_dereplicate.xml	Mon Jan 06 15:18:20 2020 -0500
@@ -23,12 +23,13 @@
         <expand macro="scoring_options"/>
         <expand macro="taxonomy_options"/>
         <expand macro="warning_options"/>
+        <expand macro="select_drep_outputs"/>
     </inputs>
     <outputs>
-        <expand macro="common_outputs" />
         <collection name="dereplicated_genomes" type="list" label="dereplicated_genomes">
-             <discover_datasets pattern="__designation__" directory="out_drep/dereplicated_genomes" ext='fasta'/>
+             <discover_datasets pattern="__designation__" directory="outdir/dereplicated_genomes" ext='fasta'/>
         </collection>
+        <expand macro="drep_outputs" />
     </outputs>
     <help><![CDATA[
         TODO: Fill in help.