Mercurial > repos > jjohnson > drep
view drep_compare.xml @ 3:3f7c9be3edde draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/drep"
author | jjohnson |
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date | Fri, 24 Jan 2020 10:24:51 -0500 |
parents | cb2fc9f60381 |
children |
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<tool id="drep_compare" name="dRep compare" version="@VERSION@.0" python_template_version="3.5"> <description>compare a list of genomes</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ @PREPARE_GENOMES@ dRep compare outdir @GENOME_COMPARISON_OPTIONS@ @CLUSTERING_OPTIONS@ @TAXONOMY_OPTIONS@ @WARNING_OPTIONS@ @GENOMES@ ]]></command> <inputs> <expand macro="genomes"/> <expand macro="genome_comparison_options"/> <expand macro="clustering_options"/> <expand macro="taxonomy_options"/> <expand macro="warning_options"/> <expand macro="select_outputs"/> </inputs> <outputs> <expand macro="common_outputs" /> </outputs> <tests> <expand macro="test_defaults_log"> <has_text text="dRep compare finished" /> </expand> </tests> <help><![CDATA[ usage: drep compare [-p PROCESSORS] [-d] [-h] [-ms MASH_SKETCH] [--S_algorithm {ANIn,goANI,ANImf,gANI}] [-n_PRESET {normal,tight}] [-pa P_ANI] [-sa S_ANI] [--SkipMash] [--SkipSecondary] [-nc COV_THRESH] [-cm {total,larger}] [--clusterAlg CLUSTERALG] [--run_tax] [--tax_method {percent,max}] [-per PERCENT] [--cent_index CENT_INDEX] [--warn_dist WARN_DIST] [--warn_sim WARN_SIM] [--warn_aln WARN_ALN] [-g [GENOMES [GENOMES ...]]] work_directory @GENOMES_HELP@ @GENOME_COMPARISON_HELP@ @CLUSTERING_HELP@ @TAXONOMY_HELP@ @WARNINGS_HELP@ ]]></help> <expand macro="citations" /> </tool>