Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv

comparison macros.xml @ 6:7003adde5668 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 17dcc85ebd7507af5557a1aee4816ac437a3f27b"
author jjohnson
date Fri, 21 Aug 2020 16:14:27 -0400
parents aaca2f8930a2
children dedfeaab569d
comparison
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5:aaca2f8930a2 6:7003adde5668
126 </param> 126 </param>
127 </xml> 127 </xml>
128 <token name="@LINK_LIB_INPUT@"><![CDATA[ 128 <token name="@LINK_LIB_INPUT@"><![CDATA[
129 #if $library 129 #if $library
130 #set $l_name = $ln_name($library) 130 #set $l_name = $ln_name($library)
131 cp '$library' $l_name && 131 cp '$library' '$l_name' &&
132 #else 132 #else
133 #set $l_name = None 133 #set $l_name = None
134 #end if 134 #end if
135 ]]></token> 135 ]]></token>
136 <token name="@LIB_INPUT@"> 136 <token name="@LIB_INPUT@">
492 mzML conversion from RAW requires special options: @MSCONVERT_CMD@ 492 mzML conversion from RAW requires special options: @MSCONVERT_CMD@
493 ]]> 493 ]]>
494 </token> 494 </token>
495 <token name="@MSCONVERT_HELP@"><![CDATA[ 495 <token name="@MSCONVERT_HELP@"><![CDATA[
496 496
497 The MSConvert command can be used to deconvolute DIA raw files. You need to use these options 497 The MSConvert command can be used to convert and deconvolute DIA raw files to mzML format. You need to use these options:
498 498
499 :: 499 ::
500 500
501 @MSCONVERT_CMD@ 501 @MSCONVERT_CMD@
502 502