Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv

comparison encyclopedia_fasta_to_prosit_csv.xml @ 4:91343296dbff draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
author jjohnson
date Tue, 07 Jul 2020 11:57:34 -0400
parents d0202c597434
children
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3:b9a2af09b828 4:91343296dbff
2 <description>Create Prosit CSV Input From a Protein FASTA</description> 2 <description>Create Prosit CSV Input From a Protein FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 EncyclopeDIA -convert -fastatoprositcsv 8 EncyclopeDIA -convert -fastatoprositcsv
9 -i '$i' 9 -i '$i'
10 -minCharge $minCharge 10 -minCharge $minCharge
11 -maxCharge $maxCharge 11 -maxCharge $maxCharge
12 -defaultCharge $defaultCharge 12 -defaultCharge $defaultCharge