Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv

comparison macros.xml @ 7:dedfeaab569d draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1-dirty"
author jjohnson
date Thu, 10 Sep 2020 19:04:03 +0000
parents 7003adde5668
children e3c67833efac
comparison
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6:7003adde5668 7:dedfeaab569d
100 <token name="@FASTA_INPUT@"> 100 <token name="@FASTA_INPUT@">
101 -f '$f_name' 101 -f '$f_name'
102 </token> 102 </token>
103 103
104 <xml name="target_fasta"> 104 <xml name="target_fasta">
105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true"/> 105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true">
106 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="target FASTA file contains peptides"/> 106 <help>Optional - Only analyze this subset of the background fasta proteome</help>
107 </param>
108 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Target FASTA file contains peptides">
109 <help>Rather than full proteins</help>
110 </param>
107 </xml> 111 </xml>
108 <token name="@LINK_TARGET_FASTA@"><![CDATA[ 112 <token name="@LINK_TARGET_FASTA@"><![CDATA[
109 #if $target_fasta 113 #if $target_fasta
110 #set $t_name = $ln_name($target_fasta) 114 #set $t_name = $ln_name($target_fasta)
111 ln -s '$target_fasta' '$t_name' && 115 ln -s '$target_fasta' '$t_name' &&