Mercurial > repos > jjohnson > ensembl_variant_report

comparison ensembl_variant_report.xml @ 2:f87fe6bc48f4 draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 6b6e5c13531bf909c4c70b7f8f9e28b4206d9068-dirty
author jjohnson
date Mon, 18 Mar 2019 21:43:34 -0400
parents 9f4ea174ce3d
children 652d35c42bca
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1:a67b4de184c2 2:f87fe6bc48f4
1 <tool id="ensembl_variant_report" name="Ensembl Variant Report" version="0.1.0"> 1 <tool id="ensembl_variant_report" name="Ensembl Variant Report" version="0.2.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.40">gtf_to_genes</requirement> 3 <requirement type="package" version="1.40">gtf_to_genes</requirement>
4 <requirement type="package" version="3.1.4">twobitreader</requirement> 4 <requirement type="package" version="3.1.4">twobitreader</requirement>
5 <requirement type="package" version="1.62">biopython</requirement> 5 <requirement type="package" version="1.62">biopython</requirement>
6 </requirements> 6 </requirements>
92 help="Ignored for frame shifts"/> 92 help="Ignored for frame shifts"/>
93 </section> 93 </section>
94 94
95 </inputs> 95 </inputs>
96 <outputs> 96 <outputs>
97 <data name="output" format="tabular" /> 97 <data name="output" format="tabular" >
98 <actions>
99 <action name="column_names" type="metadata"
100 default="Gene,Ref_location,Ref_seq,Var_seq,Frequency,DP,Ensemble_Gene_transcript,AA_pos,AA_var,Protein_len,Stop_Codon,Variant_Peptide,Transcipt_type"/>
101 </actions>
102 </data>
98 </outputs> 103 </outputs>
99 <tests> 104 <tests>
100 <test> 105 <test>
101 <param name="fmt" value="vcf"/> 106 <param name="fmt" value="vcf"/>
102 <param name="input_vcf" value="GRCh38_X400k_ANN.vcf" ftype="vcf"/> 107 <param name="input_vcf" value="GRCh38_X400k_ANN.vcf" ftype="vcf"/>