Mercurial > repos > jjohnson > ensembl_variant_report
diff test-data/GRCh38_X400k.tsv @ 0:9f4ea174ce3d draft
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit e6aa05bbbee3cc7d98f16354fc41c674f439ff1b-dirty
| author | jjohnson |
|---|---|
| date | Thu, 14 Jun 2018 17:51:39 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/GRCh38_X400k.tsv Thu Jun 14 17:51:39 2018 -0400 @@ -0,0 +1,62 @@ +#CHROM POS REF ALT ANN[*].EFFECT ANN[*].GENE ANN[*].FEATUREID DP DPR ANN[*].CDS_POS ANN[*].HGVS_C ANN[*].HGVS_P ANN[*].AA_POS ANN[*].BIOTYPE +X 284201 T C missense_variant PLCXD1 ENST00000381657 693 1,598 14 n.14T>C p.Val5Ala 5 ensembl_havana +X 284201 T C missense_variant PLCXD1 ENST00000399012 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000430923 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000445062 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000429181 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000381663 693 1,598 14 n.14T>C p.Val5Ala 5 ensembl +X 284201 T C missense_variant PLCXD1 ENST00000443019 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000415337 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000447472 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 284201 T C missense_variant PLCXD1 ENST00000448477 693 1,598 14 n.14T>C p.Val5Ala 5 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000381657 21 3,10 247 n.246_247insC p.Lys83fs 83 ensembl_havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000399012 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000430923 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000445062 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000381663 21 3,10 247 n.246_247insC p.Lys83fs 83 ensembl +X 288851 G GC frameshift_variant PLCXD1 ENST00000415337 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000447472 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 288851 G GC frameshift_variant PLCXD1 ENST00000448477 21 3,10 247 n.246_247insC p.Lys83fs 83 havana +X 290695 C G missense_variant PLCXD1 ENST00000381657 910 130,681 312 n.312C>G p.Asp104Glu 104 ensembl_havana +X 290695 C G missense_variant PLCXD1 ENST00000399012 910 130,681 312 n.312C>G p.Asp104Glu 104 havana +X 290695 C G missense_variant PLCXD1 ENST00000484611 910 130,681 404 n.404C>G p.Thr135Ser 135 havana +X 290695 C G missense_variant PLCXD1 ENST00000430923 910 130,681 312 n.312C>G p.Asp104Glu 104 havana +X 290695 C G missense_variant PLCXD1 ENST00000381663 910 130,681 312 n.312C>G p.Asp104Glu 104 ensembl +X 290695 C G missense_variant PLCXD1 ENST00000415337 910 130,681 312 n.312C>G p.Asp104Glu 104 havana +X 290695 C G missense_variant PLCXD1 ENST00000447472 910 130,681 312 n.312C>G p.Asp104Glu 104 havana +X 290695 C G missense_variant PLCXD1 ENST00000448477 910 130,681 312 n.312C>G p.Asp104Glu 104 havana +X 299221 G C missense_variant PLCXD1 ENST00000381657 18 3,13 858 n.858G>C p.Glu286Asp 286 ensembl_havana +X 299221 G C missense_variant PLCXD1 ENST00000399012 18 3,13 858 n.858G>C p.Glu286Asp 286 havana +X 299221 G C missense_variant PLCXD1 ENST00000381663 18 3,13 858 n.858G>C p.Glu286Asp 286 ensembl +X 307850 G C missense_variant GTPBP6 ENST00000485332 24 7,8 1076 n.1076C>G p.Pro359Arg 359 havana +X 307850 G C missense_variant GTPBP6 ENST00000326153 24 7,8 1156 n.1156C>G p.His386Asp 386 ensembl_havana +X 311500 C CAT frameshift_variant GTPBP6 ENST00000485332 56 11,22 963 n.963_964insAT p.Gly322fs 321 havana +X 311500 C CAT frameshift_variant GTPBP6 ENST00000326153 56 11,22 1043 n.1043_1044insAT p.Asp349fs 348 ensembl_havana +X 334496 A G missense_variant PPP2R3B ENST00000477110 159 52,60 5545 n.5545T>C p.Cys1849Arg 1849 havana +X 334496 A G missense_variant PPP2R3B ENST00000479438 159 52,60 829 n.829T>C p.Cys277Arg 277 havana +X 338625 G A missense_variant PPP2R3B ENST00000390665 308 146,132 1556 n.1556C>T p.Ala519Val 519 ensembl_havana +X 338625 G A missense_variant PPP2R3B ENST00000468169 308 146,132 701 n.701C>T p.Ala234Val 234 havana +X 338627 A G missense_variant PPP2R3B ENST00000477110 301 0,271 1414 n.1414T>C p.Cys472Arg 472 havana +X 338627 A G missense_variant PPP2R3B ENST00000479438 301 0,271 784 n.784T>C p.Cys262Arg 262 havana +X 338856 A G missense_variant PPP2R3B ENST00000468169 517 15,390 470 n.470T>C p.Leu157Pro 157 havana +X 340856 CTG C frameshift_variant PPP2R3B ENST00000477110 17 0,11 1118 n.1118_1119delCA p.Ala373fs 373 havana +X 340856 CTG C frameshift_variant PPP2R3B ENST00000390665 17 0,11 1258 n.1258_1259delCA p.Gln420fs 420 ensembl_havana +X 340856 CTG C frameshift_variant PPP2R3B ENST00000479438 17 0,11 488 n.488_489delCA p.Ala163fs 163 havana +X 340856 CTG C frameshift_variant PPP2R3B ENST00000468169 17 0,11 336 n.336_337delCA p.Ser112fs 112 havana +X 340856 CTG C frameshift_variant PPP2R3B ENST00000484364 17 0,11 639 n.639_640delCA p.Ser213fs 213 havana +X 340928 C CA frameshift_variant PPP2R3B ENST00000477110 65 0,50 1047 n.1047_1048insT p.Val350fs 349 havana +X 340928 C CA frameshift_variant PPP2R3B ENST00000390665 65 0,50 1187 n.1187_1188insT p.Trp396fs 396 ensembl_havana +X 340928 C CA frameshift_variant PPP2R3B ENST00000479438 65 0,50 417 n.417_418insT p.Val140fs 139 havana +X 340928 C CA frameshift_variant PPP2R3B ENST00000468169 65 0,50 265 n.265_266insT p.Gly89fs 89 havana +X 340928 C CA frameshift_variant PPP2R3B ENST00000484364 65 0,50 568 n.568_569insT p.Gly190fs 190 havana +X 341347 A C,G missense_variant PPP2R3B ENST00000477110 48 0,20,15 995 n.995T>G p.Leu332Arg 332 havana +X 341347 A C,G missense_variant PPP2R3B ENST00000477110 48 0,20,15 995 n.995T>C p.Leu332Pro 332 havana +X 341347 A C,G missense_variant PPP2R3B ENST00000390665 48 0,20,15 1135 n.1135T>G p.Trp379Gly 379 ensembl_havana +X 341347 A C,G missense_variant PPP2R3B ENST00000390665 48 0,20,15 1135 n.1135T>C p.Trp379Arg 379 ensembl_havana +X 341347 A C,G missense_variant PPP2R3B ENST00000479438 48 0,20,15 365 n.365T>G p.Leu122Arg 122 havana +X 341347 A C,G missense_variant PPP2R3B ENST00000479438 48 0,20,15 365 n.365T>C p.Leu122Pro 122 havana +X 345580 G A missense_variant PPP2R3B ENST00000390665 6 0,4 972 n.972C>T p.Trp324Cys 324 ensembl_havana +X 345580 G A missense_variant PPP2R3B ENST00000468169 6 0,4 50 n.50C>T p.Gly17Val 17 havana +X 345580 G A missense_variant PPP2R3B ENST00000484364 6 0,4 47 n.47C>T p.Gly16Val 16 havana +X 345580 G A missense_variant PPP2R3B ENST00000477636 6 0,4 434 n.434C>T p.Gly145Val 145 havana +X 345580 G A missense_variant PPP2R3B ENST00000445792 6 0,4 1314 n.1314C>T p.Trp438Cys 438 havana