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comparison pe_sync.xml @ 1:b0ab279b5add default tip

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Add test cases
author Jim Johnson <jj@umn.edu>
date Wed, 20 Mar 2013 08:26:48 -0500
parents 751f4938cf0d
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0:751f4938cf0d 1:b0ab279b5add
15 <outputs> 15 <outputs>
16 <data format="txt" name="output" label="pe-sync report for ${input1.name} and ${input2.name}"/> 16 <data format="txt" name="output" label="pe-sync report for ${input1.name} and ${input2.name}"/>
17 </outputs> 17 </outputs>
18 <tests> 18 <tests>
19 <test> 19 <test>
20 <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
21 <param name="input2" ftype="fastq" value="reads2.fastqsanger" />
22 <param name="quickcheck" value="false"/>
23 <output name="output">
24 <assert_contents>
25 <has_text text="PASSED" />
26 </assert_contents>
27 </output>
20 </test> 28 </test>
29 <test>
30 <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
31 <param name="input2" ftype="fastq" value="reads_unsync_2.fastqsanger" />
32 <param name="quickcheck" value="false"/>
33 <output name="output">
34 <assert_contents>
35 <has_text text="FAILED" />
36 </assert_contents>
37 </output>
38 </test>
39
21 </tests> 40 </tests>
22 <help> 41 <help>
23 Paired-end read file synchronization checks if left and right reads are in the same order. 42 Paired-end read file synchronization checks if left and right reads are in the same order.
24 43
25 The "quick" option will not report the percent of out-of-sync reads 44 The "quick" option will not report the percent of out-of-sync reads