Mercurial > repos > jjohnson > fastq_sync

diff pe_sync.xml @ 1:b0ab279b5add default tip

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Add test cases
author Jim Johnson <jj@umn.edu>
date Wed, 20 Mar 2013 08:26:48 -0500
parents 751f4938cf0d
children
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--- a/pe_sync.xml	Tue Feb 05 15:23:18 2013 -0500
+++ b/pe_sync.xml	Wed Mar 20 08:26:48 2013 -0500
@@ -17,7 +17,26 @@
   </outputs>
   <tests>
     <test>
+      <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
+      <param name="input2" ftype="fastq" value="reads2.fastqsanger" />
+      <param name="quickcheck" value="false"/>
+      <output name="output">
+        <assert_contents>
+            <has_text text="PASSED" />
+        </assert_contents>
+      </output>
     </test>
+    <test>
+      <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
+      <param name="input2" ftype="fastq" value="reads_unsync_2.fastqsanger" />
+      <param name="quickcheck" value="false"/>
+      <output name="output">
+        <assert_contents>
+            <has_text text="FAILED" />
+        </assert_contents>
+      </output>
+    </test>
+
   </tests>
   <help>
 Paired-end read file synchronization checks if left and right reads are in the same order.