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comparison find_in_reference.xml @ 3:2429b413d90a draft default tip

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"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/find_in_reference commit 074e95e1b598ec41f0e18a2798b00cf65e9b399e-dirty"
author jjohnson
date Thu, 12 May 2022 19:30:54 +0000
parents c4fd2ea4f988
children
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2:c4fd2ea4f988 3:2429b413d90a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="find_in_reference" name="find in reference" version="0.0.3"> 2 <tool id="find_in_reference" name="find in reference" version="0.1.0">
3 <description>filter peptides that are present in proteins</description> 3 <description>filter peptides that are present in proteins</description>
4 <command interpreter="python">find_in_reference.py --input "$input" 4 <command interpreter="python">find_in_reference.py --input "$input"
5 --reference "$reference" 5 --reference "$reference"
6 #if $column.set == 'yes': 6 #if $column.set == 'yes':
7 --input_column $column.input_column 7 --input_column $column.input_column
104 <output name="novel" file="novel_peptides.tabular"/> 104 <output name="novel" file="novel_peptides.tabular"/>
105 </test> 105 </test>
106 <test> 106 <test>
107 <param name="input" value="human_proteins.tabular" ftype="tabular" dbkey="hg19"/> 107 <param name="input" value="human_proteins.tabular" ftype="tabular" dbkey="hg19"/>
108 <param name="reference" value="human_peptides.tabular" ftype="tabular" dbkey="hg19"/> 108 <param name="reference" value="human_peptides.tabular" ftype="tabular" dbkey="hg19"/>
109 <conditional name="column">
110 <param name="set" value="yes"/>
111 <param name="input_column" value="2"/>
112 <param name="reference_column" value="2"/>
113 </conditional>
109 <param name="reverse_find" value="True"/> 114 <param name="reverse_find" value="True"/>
110 <param name="outputs" value="found"/> 115 <param name="outputs" value="found"/>
111 <output name="found" file="found_proteins.tabular"/> 116 <output name="found" file="found_proteins.tabular"/>
112 </test> 117 </test>
113 </tests> 118 </tests>