Mercurial > repos > jjohnson > gmap

comparison tool_dependencies.xml @ 11:6adc485b6dc0 draft default tip

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author jjohnson
date Tue, 31 Jul 2012 08:19:46 -0400
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10:93911bac43da 11:6adc485b6dc0
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="gmap" version="0.9.4_9696d0ce8a962f7bb61c4791be5ce44312b81cf8">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2011-11-30.tar.gz</action>
7 <action type="shell_command"> ./configure --prefix=bin --with-gmapdb=../gmapdb</action>
8 <action type="shell_command">make</action>
9 <action type="move_directory_files">
10 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
12 </action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 </readme>
20 </package>
21 </tool_dependency>