Mercurial > repos > jjohnson > gmap
comparison snpindex.xml @ 8:a89fec682254
gmap/gsnap updated to version 2011-11-30
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 08 Dec 2011 11:00:46 -0600 |
| parents | 561503a442f0 |
| children |
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| 7:561503a442f0 | 8:a89fec682254 |
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| 1 <tool id="gmap_snpindex" name="GMAP SNP Index" version="2.0.0"> | 1 <tool id="gmap_snpindex" name="GMAP SNP Index" version="2.0.0"> |
| 2 <description>build index files for known SNPs</description> | 2 <description>build index files for known SNPs</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="binary">snpindex</requirement> | 4 <requirement type="binary">snpindex</requirement> |
| 5 <!-- proposed tag for added datatype dependencies --> | |
| 6 <requirement type="datatype">gmapsnpindex</requirement> | |
| 7 <requirement type="datatype">gmapdb</requirement> | |
| 8 <requirement type="datatype">gmap_snps</requirement> | |
| 9 <requirement type="datatype">snps.iit</requirement> | |
| 10 </requirements> | 5 </requirements> |
| 11 <version_string>snpindex --version</version_string> | 6 <version_string>snpindex --version</version_string> |
| 12 <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> | 7 <command interpreter="command"> /bin/bash $shscript 2>1 1> $output </command> |
| 13 <inputs> | 8 <inputs> |
| 14 <conditional name="refGenomeSource"> | 9 <conditional name="refGenomeSource"> |