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comparison mothur/tool-data/mothur_calculators.loc @ 2:e990ac8a0f58

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Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
author jjohnson
date Tue, 07 Jun 2011 17:39:06 -0400
parents fcc0778f6987
children a6189f58fedb
comparison
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1:fcc0778f6987 2:e990ac8a0f58
24 ace single sing Community richness the ACE estimator 24 ace single sing Community richness the ACE estimator
25 bootstrap single sing Community richness the bootstrap estimator 25 bootstrap single sing Community richness the bootstrap estimator
26 chao single sing Community richness the Chao1 estimator 26 chao single sing Community richness the Chao1 estimator
27 jack single sing Community richness the jackknife estimator 27 jack single sing Community richness the jackknife estimator
28 sobs single sing Community richness the observed richness 28 sobs single sing Community richness the observed richness
29 ##Community evenness
30 simpsoneven single sing Community evenness a Simpson index-based measure of evenness
31 shannoneven single sing Community evenness a Shannon index-based measure of evenness
32 heip single sing Community evenness Heip's metric of community evenness
33 smithwilson single sing Community evenness Smith and Wilson's metric of community evenness
29 ##Community diversity 34 ##Community diversity
30 bergerparker single xxxx Community diversity the Berger-Parker index 35 bergerparker single xxxx Community diversity the Berger-Parker index
31 coverage single sing Community diversity the sampling coverage coverage 36 coverage single sing Community diversity the sampling coverage
37 goodscoverage single sing Community diversity the Good's estimate of sampling coverage
32 invsimpson single sing Community diversity the Simpson index 38 invsimpson single sing Community diversity the Simpson index
33 npshannon single sing Community diversity the non-parametric Shannon index 39 npshannon single sing Community diversity the non-parametric Shannon index
34 qstat single xxxx Community diversity the Q statistic 40 qstat single xxxx Community diversity the Q statistic
35 shannon single sing Community diversity the Shannon index 41 shannon single sing Community diversity the Shannon index
36 simpson single sing Community diversity the Simpson index 42 simpson single sing Community diversity the Simpson index
37 simpsoneven single sing Community diversity the Simpson index
38 smithwilson single sing Smith and Wilson's metric of community evenness
39 ##Estimates of number of additional OTUs observed with extra sampling 43 ##Estimates of number of additional OTUs observed with extra sampling
40 boneh single xxxx Estimator Boneh's estimator 44 boneh single xxxx Estimator Boneh's estimator
41 efron single xxxx Estimator Efron's estimator 45 efron single xxxx Estimator Efron's estimator
42 shen single xxxx Estimator Shen's estimator 46 shen single xxxx Estimator Shen's estimator
43 solow single xxxx Estimator Solow's estimator 47 solow single xxxx Estimator Solow's estimator
53 anderberg shared xxxx Community Membership Similarity the Anderberg similarity coefficient 57 anderberg shared xxxx Community Membership Similarity the Anderberg similarity coefficient
54 jclass shared shar Community Membership Similarity the traditional Jaccard similarity coefficient based on the observed richness 58 jclass shared shar Community Membership Similarity the traditional Jaccard similarity coefficient based on the observed richness
55 jest shared shar Community Membership Similarity the Jaccard similarity coefficient based on the Chao1 estimated richnesses 59 jest shared shar Community Membership Similarity the Jaccard similarity coefficient based on the Chao1 estimated richnesses
56 kulczynski shared xxxx Community Membership Similarity the Kulczynski similarity coefficient 60 kulczynski shared xxxx Community Membership Similarity the Kulczynski similarity coefficient
57 kulczynskicody shared xxxx Community Membership Similarity the Kulczynski-Cody similarity coefficient 61 kulczynskicody shared xxxx Community Membership Similarity the Kulczynski-Cody similarity coefficient
62 kstest shared xxxx Kolmogorov-Smirnov test
58 lennon shared xxxx Community Membership Similarity the Lennon similarity coefficient 63 lennon shared xxxx Community Membership Similarity the Lennon similarity coefficient
59 ochiai shared xxxx Community Membership Similarity the Ochiai similarity coefficient 64 ochiai shared xxxx Community Membership Similarity the Ochiai similarity coefficient
60 sorclass shared shar Community Membership Similarity the Sorenson similarity coefficient based on the observed richness 65 sorclass shared shar Community Membership Similarity the Sorenson similarity coefficient based on the observed richness
61 sorest shared shar Community Membership Similarity the Sorenson similarity coefficient based on the Chao1 estimated richnesses 66 sorest shared shar Community Membership Similarity the Sorenson similarity coefficient based on the Chao1 estimated richnesses
62 whittaker shared xxxx Community Membership Similarity the Whittaker similarity coefficient 67 whittaker shared xxxx Community Membership Similarity the Whittaker similarity coefficient