Mercurial > repos > jjohnson > mothur_toolsuite

diff mothur/tools/mothur/consensus.seqs.xml @ 25:bfbaf823be4c

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Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
author Jim Johnson <jj@umn.edu>
date Wed, 16 May 2012 12:28:44 -0500
parents 7bfe1f843858
children 49058b1f8d3f
line wrap: on
line diff
--- a/mothur/tools/mothur/consensus.seqs.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/consensus.seqs.xml	Wed May 16 12:28:44 2012 -0500
@@ -35,9 +35,8 @@
    <when value="yes">
     <param name="list" type="data" format="list" label="list - OTU List"/>
     <param name="label" type="select" optional="true" label="label - OTU Labels" multiple="true">
-     <options from_dataset="list">
-      <column name="name" index="0"/>
-      <column name="value" index="0"/>
+     <options>
+      <filter type="data_meta" ref="list" key="labels" />
      </options>
     </param>
    </when>