Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tools/mothur/indicator.xml @ 25:bfbaf823be4c
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 16 May 2012 12:28:44 -0500 |
| parents | 4f797d3eee3a |
| children | 49058b1f8d3f |
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--- a/mothur/tools/mothur/indicator.xml Wed Mar 28 15:45:03 2012 -0500 +++ b/mothur/tools/mothur/indicator.xml Wed May 16 12:28:44 2012 -0500 @@ -29,19 +29,13 @@ <inputs> <param name="otu" type="data" format="shared,relabund" label="shared/relabund - Otu dataset"/> <param name="label" type="select" optional="true" label="label - OTU Labels" > - <options from_dataset="otu"> - <column name="name" index="0"/> - <column name="value" index="0"/> - <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/> - <filter type="unique_value" name="unq_lbl" column="0" /> + <options> + <filter type="data_meta" ref="otu" key="labels" /> </options> </param> <param name="groups" type="select" optional="true" label="groups - Pick groups to annalyze" multiple="true"> - <options from_dataset="otu"> - <column name="name" index="1"/> - <column name="value" index="1"/> - <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/> - <filter type="unique_value" name="unq_grp" column="1" /> + <options> + <filter type="data_meta" ref="otu" key="groups" /> </options> </param> <param name="tree" type="data" format="tree" optional="true" label="tree - A newick-formatted tree"