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view mothur/tool-data/mothur_taxonomy.loc @ 3:b849cd7e132a

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workflow cleanup_param_values recurses through paramnames whenever they start with a paramname_, so change input to input_fasta
author jj@dbw-galaxy-dev.msi.umn.edu
date Wed, 08 Jun 2011 14:59:08 -0500
parents 3202a38e44d9
children
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#This is a sample file distributed with Galaxy that enables tools
#to use a directory of metagenomics files.  
#file has this format (white space characters are TAB characters):
#
#<taxonomyname>	<file_base>
#
archaea.gg	/project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax
archaea.silva	/project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax
archaea.rdp	/project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax
archaea.ncbi	/project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax
bacteria.gg	/project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax
bacteria.silva	/project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax
bacteria.ncbi	/project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax
bacteria.rdp	/project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax
bacteria.rdp6	/project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax
eukarya.silva	/project/db/galaxy/mothur/silva.eukarya.silva.tax
eukarya.ncbi	/project/db/galaxy/mothur/silva.eukarya.ncbi.tax