Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/tool-data/mothur_taxonomy.loc @ 14:ee59e5cff3ba
Mothur - make.fastq fix command name and change_format on output fastq according to qual input, fastq.info outputs qual454
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 05 Oct 2011 10:37:11 -0500 |
| parents | 3202a38e44d9 |
| children |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of metagenomics files. #file has this format (white space characters are TAB characters): # #<taxonomyname> <file_base> # archaea.gg /project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax archaea.silva /project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax archaea.rdp /project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax archaea.ncbi /project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax bacteria.gg /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax bacteria.silva /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax bacteria.ncbi /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax bacteria.rdp /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax bacteria.rdp6 /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax eukarya.silva /project/db/galaxy/mothur/silva.eukarya.silva.tax eukarya.ncbi /project/db/galaxy/mothur/silva.eukarya.ncbi.tax