Mercurial > repos > jjohnson > package_defuse_0_6_2

comparison tool_dependencies.xml @ 1:8bfe32e9a29b draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/packages/package_defuse_0_6_2 commit 607248de34dee7cbdc6a48982463d74da091d55e-dirty
author jjohnson
date Tue, 05 Dec 2017 13:40:30 -0500
parents 5a4237bbe6bf
children 86278e018303
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0:5a4237bbe6bf 1:8bfe32e9a29b
8 <actions> 8 <actions>
9 <action type="shell_command">git clone https://bitbucket.org/dranew/defuse.git defuse</action> 9 <action type="shell_command">git clone https://bitbucket.org/dranew/defuse.git defuse</action>
10 <action type="shell_command">git reset --hard 5c13b80f62bcbb8ac4b7d517488be0986b080723</action> 10 <action type="shell_command">git reset --hard 5c13b80f62bcbb8ac4b7d517488be0986b080723</action>
11 <!-- populate the environment variables from the dependent repos --> 11 <!-- populate the environment variables from the dependent repos -->
12 <action type="set_environment_for_install"> 12 <action type="set_environment_for_install">
13 <repository changeset_revision="53dae122c9c7" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 13 <repository changeset_revision="9cc5f2bc9a9c" name="package_boost_1_55" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
14 <package name="boost" version="1.53.0" /> 14 <package name="boost" version="1.55.0" />
15 </repository> 15 </repository>
16 </action> 16 </action>
17 <action type="shell_command">export CPLUS_INCLUDE_PATH=$BOOST_ROOT_DIR/include:$CPLUS_INCLUDE_PATH &amp;&amp; cd tools &amp;&amp; make</action> 17 <action type="shell_command">export CPLUS_INCLUDE_PATH=$BOOST_ROOT_DIR/include:$CPLUS_INCLUDE_PATH &amp;&amp; cd tools &amp;&amp; make</action>
18 <!-- modify create_reference_dataset.pl to handle more than just human genomes --> 18 <!-- modify create_reference_dataset.pl to handle more than just human genomes -->
19 <action type="shell_command"> 19 <action type="shell_command">