Mercurial > repos > jjohnson > package_gmap_2013_05_09

changeset 0:953f5eb53593 draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/packages/package_gmap_2013_05_09 commit fff24235f2fcb299330e34d04c03e1d931606f8d-dirty
author jjohnson
date Sun, 17 Jan 2016 13:56:05 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 18 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Jan 17 13:56:05 2016 -0500
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gmap" version="2013-05-09">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
+                <action type="shell_command"> ./configure --prefix=$INSTALL_DIR --with-gmapdb=$INSTALL_DIR/gmapdb</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>