# HG changeset patch
# User jjohnson
# Date 1405351180 14400
# Node ID a7d6848d1e58eadc52fceb9d29406dfbd0ba1d2e

Uploaded

diff -r 000000000000 -r a7d6848d1e58 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 14 11:19:40 2014 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="shear" version="0.2.11">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.11-compiled.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+SHEAR: Sample Heterogeneity Estimation and Assembly by Reference
+
+SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.
+
+http://vk.cs.umn.edu/SHEAR/
+        </readme>
+    </package>
+</tool_dependency>