Mercurial > repos > jjohnson > pileup_to_vcf

annotate test-data/test.pileup @ 1:bb0ac51f1b02

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Handle delection char: *
author Jim Johnson <jj@umn.edu>
date Mon, 18 Feb 2013 19:11:47 -0600
parents 3890f8ba0e4d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
1 seq1 272 T 24 ,.$.....,,.,.,...,,,.,..^+. <<<+;<<<<<<<<<<<=<;<;7<&
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
2 seq1 273 T 23 ,.....,,.,.,...,,,.,..A <<<;<<<<<<<<<3<=<<<;<<+
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
3 seq1 274 T 23 ,.$....,,.,.,...,,,.,... 7<7;<;<<<<<<<<<=<;<;<<6
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
4 seq1 275 A 23 ,$....,,.,.,...,,,.,...^l. <+;9*<<<<<<<<<=<<:;<<<<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
5 seq1 276 G 22 ...T,,.,.,...,,,.,.... 33;+<<7=7<<7<&<<1;<<6<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
6 seq1 277 T 22 ....,,.,.,.C.,,,.,..G. +7<;<<<<<<<&<=<<:;<<&<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
7 seq1 278 G 23 ....,,.,.,...,,,.,....^k. %38*<<;<7<<7<=<<<;<<<<<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
8 seq1 279 C 23 A..T,,.,.,...,,,.,..... ;75&<<<<<<<<<=<<<9<<:<<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
9 seq2 156 A 11 .$......+2AG.+2AG.+2AGGG <975;:<<<<<
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
10 seq3 200 A 20 ,,,,,..,.-4CACC.-4CACC....,.,,.^~. ==<<<<<<<<<<<::<;2<<
1
bb0ac51f1b02 Handle delection char: *
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
11 chr1 44520828 C 35 *********************************** !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
0
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
12 chr1 95935183 G 34 .,.,,,+1c,+1c.+1C,+1c,+1c.+1C.+1C.+1C,+1c.+1C,+1c,+1c.+1C,+1c,+1c.+1C,+1c.+1C.+1C,+1c,+1c,+1c.+1C.+1C.+1C.+1C.+1C^~c^~c IFEGIHIBIIIBAGIDI@IHCIIGHIHHEIIG!!
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
13 chr1 158571283 A 8 <,.c.c^~t^~c GIC#I#'!
3890f8ba0e4d Uploaded
jjohnson
parents:
diff changeset
14 chr6 125070485 C 216 <><<>>>>>>><<>>>><<<><<<<<>>>>><>>>>>><>>>>>>><><><>><><><>><>><<><<<>>>><<<>>>><<>>>><<<<<<<<<<<><<<<<<<><><<<<<><<<>><<<<<<<<>>>><<<<<<><><>>>>>>>>>>><<<<<<>><<<<>><><>>>>><>...,,,,,,,GGGGGGggggggGGGGggggggggg^~G^~g^~g^~g^~g IHHH:GFDH<H@IHCEIIIIHIIIDI#EACGGIEHB#HDHEBHGGDI?BHIEIIIGHBHIEDIIHHHIGHFIIDI<IIIIEEIIIIGAHIHEGGIBHBIHE;@CFIBHGGCDBGDGGGIIDC@GEAGDIHIIEEHBIIGIEGHIHHIHHHH2@G#>EBHICD@#GHHHFI9HII#I##AIIIE5@G!!!!!!!!!#!!!!!!!!$$!!$!$!#!!!