Mercurial > repos > jjohnson > pileup_to_vcf
diff test-data/test.pileup @ 0:3890f8ba0e4d
Uploaded
| author | jjohnson |
|---|---|
| date | Mon, 18 Feb 2013 11:32:50 -0500 |
| parents | |
| children | bb0ac51f1b02 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.pileup Mon Feb 18 11:32:50 2013 -0500 @@ -0,0 +1,13 @@ +seq1 272 T 24 ,.$.....,,.,.,...,,,.,..^+. <<<+;<<<<<<<<<<<=<;<;7<& +seq1 273 T 23 ,.....,,.,.,...,,,.,..A <<<;<<<<<<<<<3<=<<<;<<+ +seq1 274 T 23 ,.$....,,.,.,...,,,.,... 7<7;<;<<<<<<<<<=<;<;<<6 +seq1 275 A 23 ,$....,,.,.,...,,,.,...^l. <+;9*<<<<<<<<<=<<:;<<<< +seq1 276 G 22 ...T,,.,.,...,,,.,.... 33;+<<7=7<<7<&<<1;<<6< +seq1 277 T 22 ....,,.,.,.C.,,,.,..G. +7<;<<<<<<<&<=<<:;<<&< +seq1 278 G 23 ....,,.,.,...,,,.,....^k. %38*<<;<7<<7<=<<<;<<<<< +seq1 279 C 23 A..T,,.,.,...,,,.,..... ;75&<<<<<<<<<=<<<9<<:<< +seq2 156 A 11 .$......+2AG.+2AG.+2AGGG <975;:<<<<< +seq3 200 A 20 ,,,,,..,.-4CACC.-4CACC....,.,,.^~. ==<<<<<<<<<<<::<;2<< +chr1 95935183 G 34 .,.,,,+1c,+1c.+1C,+1c,+1c.+1C.+1C.+1C,+1c.+1C,+1c,+1c.+1C,+1c,+1c.+1C,+1c.+1C.+1C,+1c,+1c,+1c.+1C.+1C.+1C.+1C.+1C^~c^~c IFEGIHIBIIIBAGIDI@IHCIIGHIHHEIIG!! +chr1 158571283 A 8 <,.c.c^~t^~c GIC#I#'! +chr6 125070485 C 216 <><<>>>>>>><<>>>><<<><<<<<>>>>><>>>>>><>>>>>>><><><>><><><>><>><<><<<>>>><<<>>>><<>>>><<<<<<<<<<<><<<<<<<><><<<<<><<<>><<<<<<<<>>>><<<<<<><><>>>>>>>>>>><<<<<<>><<<<>><><>>>>><>...,,,,,,,GGGGGGggggggGGGGggggggggg^~G^~g^~g^~g^~g IHHH:GFDH<H@IHCEIIIIHIIIDI#EACGGIEHB#HDHEBHGGDI?BHIEIIIGHBHIEDIIHHHIGHFIIDI<IIIIEEIIIIGAHIHEGGIBHBIHE;@CFIBHGGCDBGDGGGIIDC@GEAGDIHIIEEHBIIGIEGHIHHIHHHH2@G#>EBHICD@#GHHHFI9HII#I##AIIIE5@G!!!!!!!!!#!!!!!!!!$$!!$!$!#!!!