Mercurial > repos > jjohnson > pileup_to_vcf
diff pileup_to_vcf.py @ 7:e77ab15bbce9
Fix VCF header
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 20 Mar 2013 07:50:38 -0500 |
| parents | d90f56ecd2f9 |
| children | c0a6e8f595ec |
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--- a/pileup_to_vcf.py Wed Mar 20 07:30:20 2013 -0500 +++ b/pileup_to_vcf.py Wed Mar 20 07:50:38 2013 -0500 @@ -36,9 +36,9 @@ ##fileformat=VCFv4.0 ##source=pileup_to_vcf.pyV1.1 ##INFO=<ID=DP,Number=1,Type=Integer,Description=\"Total Depth\"> -##INFO=<ID=$SAF_header,Number=.,Type=Float,Description=\"Specific Allele Frequency\"> +##INFO=<ID=SAF,Number=.,Type=Float,Description=\"Specific Allele Frequency\"> ##FILTER=<ID=DP,Description=\"Minimum depth of %s\"> -##FILTER=<ID=$SAF_header,Description=\"Allele frequency of at least %s with base quality minimum %d\"> +##FILTER=<ID=SAF,Description=\"Allele frequency of at least %s with base quality minimum %d\"> #CHROM POS ID REF ALT QUAL FILTER INFO\ """