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annotate convert_otu_table_to_unifrac_sample_mapping.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="convert_otu_table_to_unifrac_sample_mapping" name="convert_otu_table_to_unifrac_sample_mapping" version="1.2.0">
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2 <description>Convert a QIIME OTU table to a UniFrac sample mapping file</description>
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3 <requirements>
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4 <requirement type="binary">convert_otu_table_to_unifrac_sample_mapping.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 convert_otu_table_to_unifrac_sample_mapping.py
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10 --otu_table_fp=$otu_table_fp
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11 --output_fp=$output_fp
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12 </command>
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13 <inputs>
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14 <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
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15 help="path to the otu table [REQUIRED]"/>
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16 </inputs>
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17 <outputs>
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18 <data format="txt" name="output_fp"/>
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19 </outputs>
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20 <tests>
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21 </tests>
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22 <help>
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23
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24 </help>
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25 </tool>
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