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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="convert_unifrac_sample_mapping_to_otu_table" name="convert_unifrac_sample_mapping_to_otu_table" version="1.2.0">
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2 <description>Convert a UniFrac sample mapping file to an OTU table</description>
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3 <requirements>
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4 <requirement type="binary">convert_unifrac_sample_mapping_to_otu_table.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 convert_unifrac_sample_mapping_to_otu_table.py
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10 --sample_mapping_fp=$sample_mapping_fp
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11 --output_fp=$output_fp
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12 </command>
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13 <inputs>
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14 <param name="sample_mapping_fp" type="data" format="tabular" label="sample_mapping_fp"
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15 help="path to the sample mapping file [REQUIRED]"/>
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16 </inputs>
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17 <outputs>
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18 <data format="txt" name="output_fp"/>
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19 </outputs>
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20 <tests>
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21 </tests>
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22 <help>
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23
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24 </help>
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25 </tool>
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