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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="fix_arb_fasta" name="fix_arb_fasta" version="1.2.0">
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2 <description>Reformat ARB FASTA files</description>
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3 <requirements>
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4 <requirement type="binary">fix_arb_fasta.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 fix_arb_fasta.py
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10 --input_fasta_fp=$input_fasta_fp
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11 </command>
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12 <inputs>
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13 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
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14 help="path to the input fasta file [REQUIRED]"/>
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15 </inputs>
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16 <outputs>
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17
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18 </outputs>
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19 <tests>
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20 </tests>
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21 <help>
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22
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23 </help>
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24 </tool>
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