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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="principal_coordinates" name="principal_coordinates" version="1.2.0">
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2 <description>Principal Coordinates Analysis (PCoA)</description>
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3 <requirements>
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4 <requirement type="binary">principal_coordinates.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 principal_coordinates.py
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9 --input_path=$input_path
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10 --output_path=$output_path
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11 </command>
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12 <inputs>
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13 <param name="input_path" type="data" format="qiimedistmat" label="input_path"
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14 help="path to the input distance matrix file(s) (i.e., the output from beta_diversity.py). Is a directory for batch processing and a filename for a single file operation. [REQUIRED]"/>
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15 </inputs>
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16 <outputs>
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17 <data format="qiimepca" name="output_path" label="${tool.name} on ${on_string}: coordinates"/>
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18 </outputs>
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19 <tests>
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20 </tests>
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21 <help>
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22
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23 </help>
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24 </tool>
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25