Mercurial > repos > jjohnson > qiime
comparison adjust_seq_orientation.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Sun, 17 Jul 2011 10:30:11 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:e5c3175506b7 |
---|---|
1 <tool id="adjust_seq_orientation" name="adjust_seq_orientation" version="1.2.0"> | |
2 <description>Get the reverse complement of all sequences</description> | |
3 <requirements> | |
4 <requirement type="binary">adjust_seq_orientation.py</requirement> | |
5 </requirements> | |
6 <command interpreter="python"> | |
7 qiime_wrapper.py | |
8 --galaxy_tmpdir='$__new_file_path__' | |
9 adjust_seq_orientation.py | |
10 --input_fasta_fp=$input_fasta_fp | |
11 --output_fp=$output_fp | |
12 $retain_seq_id | |
13 </command> | |
14 <inputs> | |
15 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp" | |
16 help="path to the input fasta file [REQUIRED]"/> | |
17 <param name="retain_seq_id" type="boolean" truevalue="--retain_seq_id" falsevalue="" checked="false" label="retain_seq_id" | |
18 help="leave seq description lines untouched [default: append ' RC' to seq description lines]"/> | |
19 </inputs> | |
20 <outputs> | |
21 <data format="txt" name="output_fp" label="${tool.name} on ${on_string}: (RC)"/> | |
22 </outputs> | |
23 <tests> | |
24 </tests> | |
25 <help> | |
26 | |
27 </help> | |
28 </tool> | |
29 |