Mercurial > repos > jjohnson > qiime
comparison adjust_seq_orientation.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
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| date | Sun, 17 Jul 2011 10:30:11 -0500 |
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| -1:000000000000 | 0:e5c3175506b7 |
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| 1 <tool id="adjust_seq_orientation" name="adjust_seq_orientation" version="1.2.0"> | |
| 2 <description>Get the reverse complement of all sequences</description> | |
| 3 <requirements> | |
| 4 <requirement type="binary">adjust_seq_orientation.py</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 qiime_wrapper.py | |
| 8 --galaxy_tmpdir='$__new_file_path__' | |
| 9 adjust_seq_orientation.py | |
| 10 --input_fasta_fp=$input_fasta_fp | |
| 11 --output_fp=$output_fp | |
| 12 $retain_seq_id | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp" | |
| 16 help="path to the input fasta file [REQUIRED]"/> | |
| 17 <param name="retain_seq_id" type="boolean" truevalue="--retain_seq_id" falsevalue="" checked="false" label="retain_seq_id" | |
| 18 help="leave seq description lines untouched [default: append ' RC' to seq description lines]"/> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data format="txt" name="output_fp" label="${tool.name} on ${on_string}: (RC)"/> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 </tests> | |
| 25 <help> | |
| 26 | |
| 27 </help> | |
| 28 </tool> | |
| 29 |