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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="make_bootstrapped_tree" name="make_bootstrapped_tree" version="1.2.0">
2 <description>Make bootstrapped tree</description>
3 <requirements>
4 <requirement type="binary">make_bootstrapped_tree.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 make_bootstrapped_tree.py
10 --master_tree=$master_tree
11 --support=$support
12 --output_file=$output_file
13 </command>
14 <inputs>
15 <param name="master_tree" type="text" label="master_tree"
16 help="This is the path to the master tree [REQUIRED]"/>
17 <param name="support" type="text" label="support"
18 help="This is the path to the bootstrap support file [REQUIRED]"/>
19 </inputs>
20 <outputs>
21 <data format="txt" name="output_file"/>
22 </outputs>
23 <tests>
24 </tests>
25 <help>
26
27 </help>
28 </tool>
29