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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="upgma_cluster" name="upgma_cluster" version="1.2.0">
2 <description>Build a UPGMA tree comparing samples</description>
3 <requirements>
4 <requirement type="binary">upgma_cluster.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 upgma_cluster.py
10 --input_path=$input_path
11 --output_path=$output_path
12 </command>
13 <inputs>
14 <param name="input_path" type="text" label="input_path"
15 help="input path. directory for batch processing, filename for single file operation [REQUIRED]"/>
16 </inputs>
17 <outputs>
18 <data format="txt" name="output_path"/>
19 </outputs>
20 <tests>
21 </tests>
22 <help>
23
24 </help>
25 </tool>
26