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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="fix_arb_fasta" name="fix_arb_fasta" version="1.2.0">
2 <description>Reformat ARB FASTA files</description>
3 <requirements>
4 <requirement type="binary">fix_arb_fasta.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 fix_arb_fasta.py
10 --input_fasta_fp=$input_fasta_fp
11 </command>
12 <inputs>
13 <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
14 help="path to the input fasta file [REQUIRED]"/>
15 </inputs>
16 <outputs>
17
18 </outputs>
19 <tests>
20 </tests>
21 <help>
22
23 </help>
24 </tool>
25