Mercurial > repos > jjohnson > qiime
comparison principal_coordinates.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
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| date | Sun, 17 Jul 2011 10:30:11 -0500 |
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| -1:000000000000 | 0:e5c3175506b7 |
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| 1 <tool id="principal_coordinates" name="principal_coordinates" version="1.2.0"> | |
| 2 <description>Principal Coordinates Analysis (PCoA)</description> | |
| 3 <requirements> | |
| 4 <requirement type="binary">principal_coordinates.py</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 qiime_wrapper.py | |
| 8 principal_coordinates.py | |
| 9 --input_path=$input_path | |
| 10 --output_path=$output_path | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input_path" type="data" format="qiimedistmat" label="input_path" | |
| 14 help="path to the input distance matrix file(s) (i.e., the output from beta_diversity.py). Is a directory for batch processing and a filename for a single file operation. [REQUIRED]"/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="qiimepca" name="output_path" label="${tool.name} on ${on_string}: coordinates"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 </tests> | |
| 21 <help> | |
| 22 | |
| 23 </help> | |
| 24 </tool> | |
| 25 |