--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/make_otu_table.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,31 @@
+<tool id="make_otu_table" name="make_otu_table" version="1.2.0">
+ <description>Make OTU table</description>
+ <requirements>
+  <requirement type="binary">make_otu_table.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  make_otu_table.py
+  --otu_map_fp=$otu_map_fp
+  --taxonomy=$taxonomy
+  --exclude_otus_fp=$exclude_otus_fp
+  --output_fp=$output_fp
+ </command>
+ <inputs>
+  <param name="otu_map_fp" type="data" format="qiimeotu" label="otu_map_fp"
+   help="path to the input OTU map (i.e., the output from pick_otus.py) [REQUIRED]"/>
+  <param name="taxonomy" type="data" format="seq.taxonomy"  label="taxonomy"
+   help="Path to taxonomy assignment, containing the assignments of \ taxons to sequences (i.e., resulting txt file from assign_taxonomy.py)  [default: %default]"/>
+  <param name="exclude_otus_fp" type="data" format="txt" label="exclude_otus_fp"
+   help="a filepath listing OTU identifiers that should not be included in the OTU table (e.g., the output of identify_chimeric_seqs.py)"/>
+ </inputs>
+ <outputs>
+  <data format="qiimeotutable" name="output_fp" label="${tool.name} on ${on_string}: otu_table"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+