--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/transform_coordinate_matrices.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,38 @@
+<tool id="transform_coordinate_matrices" name="transform_coordinate_matrices" version="1.2.0">
+ <description>Transform 2 coordinate matrices</description>
+ <requirements>
+  <requirement type="binary">transform_coordinate_matrices.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  transform_coordinate_matrices.py
+  --input_fps=$input_fps
+  --output_dir=$__new_file_path__
+  --random_trials=$random_trials
+  --num_dimensions=$num_dimensions
+  --sample_id_map_fp=$sample_id_map_fp
+  $store_trial_details
+ </command>
+ <inputs>
+  <param name="input_fps" type="text"  label="input_fps"
+   help="comma-separated input files [REQUIRED]"/>
+  <param name="random_trials" type="integer" value="-1" label="random_trials"
+   help="Number of random permutations of matrix2 to perform.  [default: (no Monte Carlo analysis performed)]"/>
+  <param name="num_dimensions" type="integer" value="-1" label="num_dimensions"
+   help="Number of dimensions to include in output matrices [default: Consider all dimensions]"/>
+  <param name="sample_id_map_fp" type="data" format="tabular" label="sample_id_map_fp"
+   help="Map of original sample ids to new sample ids [default: %default]"/>
+  <param name="store_trial_details" type="boolean" truevalue="--store_trial_details" falsevalue="" checked="false" label="store_trial_details"
+   help="Store PC matrices for individual trials [default: False]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+