--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/extract_seqs_by_sample_id.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,32 @@
+<tool id="extract_seqs_by_sample_id" name="extract_seqs_by_sample_id" version="1.2.0">
+ <description>Extract sequences based on the SampleID</description>
+ <requirements>
+  <requirement type="binary">extract_seqs_by_sample_id.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  extract_seqs_by_sample_id.py
+  --input_fasta_fp=$input_fasta_fp
+  --sample_ids=$sample_ids
+  --output_fasta_fp=$output_fasta_fp
+  $negate
+ </command>
+ <inputs>
+  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
+   help="path to the input fasta file [REQUIRED]"/>
+  <param name="sample_ids" type="text"  label="sample_ids"
+   help="comma-separated sample_ids to include in output fasta file(or exclude if -n=True) [REQUIRED]"/>
+  <param name="negate" type="boolean" truevalue="--negate" falsevalue="" checked="false" label="negate"
+   help="negate the sample ID list (i.e., output sample ids not passed via -s) [default: False]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_fasta_fp"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+