--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/filter_by_metadata.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,37 @@
+<tool id="filter_by_metadata" name="filter_by_metadata" version="1.2.0">
+ <description>Filter OTU table by removal of specified metadata</description>
+ <requirements>
+  <requirement type="binary">filter_by_metadata.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  filter_by_metadata.py
+  --otu_table_fp=$otu_table_fp
+  --map=$map
+  --states=$states
+  --otu_outfile=$otu_outfile
+  --map_outfile=$map_outfile
+  --num_seqs_per_otu=$num_seqs_per_otu
+ </command>
+ <inputs>
+  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
+   help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
+  <param name="map" type="data" format="tabular" label="map"
+   help="path to the map file [REQUIRED]"/>
+  <param name="states" type="text"  label="states"
+   help="string containing valid states, e.g. 'STUDY_NAME:DOG' [REQUIRED]"/>
+  <param name="num_seqs_per_otu" type="integer" value="1" label="num_seqs_per_otu"
+   help="minimum counts across samples to keep OTU, default is only to keep OTUs that are present in the samples."/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="otu_outfile"/>
+  <data format="txt" name="map_outfile"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+