--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/plot_rank_abundance_graph.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,44 @@
+<tool id="plot_rank_abundance_graph" name="plot_rank_abundance_graph" version="1.2.0">
+ <description>plot rank-abundance curve</description>
+ <requirements>
+  <requirement type="binary">plot_rank_abundance_graph.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  plot_rank_abundance_graph.py
+  --otu_table_fp=$otu_table_fp
+  --sample_name=$sample_name
+  --output_dir=$__new_file_path__
+  $absolute_counts
+  $no_legend
+  $x_linear_scale
+  $y_linear_scale
+  --file_type=$file_type
+ </command>
+ <inputs>
+  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
+   help="path to the input OTU table (i.e., the output from make_otu_table.py) [REQUIRED]"/>
+  <param name="sample_name" type="text"  label="sample_name"
+   help="name of the sample to plot. Use '*' to plot all. [REQUIRED]"/>
+  <param name="absolute_counts" type="boolean" truevalue="--absolute_counts" falsevalue="" checked="false" label="absolute_counts"
+   help="plot absolute abundance values instead of relative [default: False]"/>
+  <param name="no_legend" type="boolean" truevalue="--no-legend" falsevalue="" checked="false" label="no-legend"
+   help="do not draw a legend [default: False]"/>
+  <param name="x_linear_scale" type="boolean" truevalue="--x_linear_scale" falsevalue="" checked="false" label="x_linear_scale"
+   help="draw x axis in linear scale [default: False]"/>
+  <param name="y_linear_scale" type="boolean" truevalue="--y_linear_scale" falsevalue="" checked="false" label="y_linear_scale"
+   help="draw y axis in linear scale [default: False]"/>
+  <param name="file_type" type="text" value="pdf" label="file_type"
+   help="save plot using this image type. Choice of pdf, svg, png, eps [default: pdf]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+