Mercurial > repos > jjohnson > qiime

diff principal_coordinates.xml @ 0:e5c3175506b7 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/principal_coordinates.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,25 @@
+<tool id="principal_coordinates" name="principal_coordinates" version="1.2.0">
+ <description>Principal Coordinates Analysis (PCoA)</description>
+ <requirements>
+  <requirement type="binary">principal_coordinates.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  principal_coordinates.py
+  --input_path=$input_path
+  --output_path=$output_path
+ </command>
+ <inputs>
+  <param name="input_path" type="data" format="qiimedistmat"  label="input_path"
+   help="path to the input distance matrix file(s) (i.e., the output from beta_diversity.py). Is a directory for batch processing and a filename for a single file operation. [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  <data format="qiimepca" name="output_path" label="${tool.name} on ${on_string}: coordinates"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+