--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/shared_phylotypes.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,32 @@
+<tool id="shared_phylotypes" name="shared_phylotypes" version="1.2.0">
+ <description>Compute shared OTUs between all pairs of samples</description>
+ <requirements>
+  <requirement type="binary">shared_phylotypes.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  shared_phylotypes.py
+  --otu_table_fp=$otu_table_fp
+  --output_fp=$output_fp
+  --reference_sample=$reference_sample
+  $force_overwrite
+ </command>
+ <inputs>
+  <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
+   help="path to the input OTU table or a directory containing (only) OTU tables [REQUIRED]"/>
+  <param name="reference_sample" type="text"  label="reference_sample"
+   help="Name of reference sample to which all pairs of samples should be compared [default: %default]"/>
+  <param name="force_overwrite" type="boolean" truevalue="--force_overwrite" falsevalue="" checked="false" label="force_overwrite"
+   help="Overwrite output_fp if already exists [default: ('NO', 'DEFAULT')]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_fp"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+