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diff trflp_file_to_otu_table.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trflp_file_to_otu_table.xml	Sun Jul 17 10:30:11 2011 -0500
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+<tool id="trflp_file_to_otu_table" name="trflp_file_to_otu_table" version="1.2.0">
+ <description>Convert TRFLP text file to an OTU table</description>
+ <requirements>
+  <requirement type="binary">trflp_file_to_otu_table.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  trflp_file_to_otu_table.py
+  --input_path=$input_path
+  --output_path=$output_path
+ </command>
+ <inputs>
+  <param name="input_path" type="text"  label="input_path"
+   help="input path: TRFLP text file [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_path"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+