Mercurial > repos > jjohnson > qiime
view blast_wrapper.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
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date | Sun, 17 Jul 2011 10:30:11 -0500 |
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<tool id="blast_wrapper" name="blast_wrapper" version="1.2.0"> <description>Blast Interface</description> <requirements> <requirement type="binary">blast_wrapper.py</requirement> </requirements> <command interpreter="python"> qiime_wrapper.py --galaxy_tmpdir='$__new_file_path__' blast_wrapper.py --input_fasta_fp=$input_fasta_fp --refseqs_fp=$refseqs_fp --num_seqs_per_blast_run=$num_seqs_per_blast_run </command> <inputs> <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp" help="path to the input fasta file [REQUIRED]"/> <param name="refseqs_fp" type="data" format="fasta" label="refseqs_fp" help="path to blast database as a fasta file [REQUIRED]"/> <param name="num_seqs_per_blast_run" type="integer" value="1000" label="num_seqs_per_blast_run" help="number of sequences passed to each blast call - useful for very large sequence collections [default: 1000]"/> </inputs> <outputs> </outputs> <tests> </tests> <help> </help> </tool>