<tool id="merge_denoiser_output" name="merge_denoiser_output" version="1.2.0">
 <description>Merge the output of denoising step back into QIIME</description>
 <requirements>
  <requirement type="binary">merge_denoiser_output.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  merge_denoiser_output.py
  --map_file=$map_file
  --otu_picker_map_file=$otu_picker_map_file
  --fasta_fp=$fasta_fp
  --denoised_fasta_fp=$denoised_fasta_fp
  --output_dir=$__new_file_path__
 </command>
 <inputs>
  <param name="map_file" type="data" format="tabular" label="map_file"
   help="path to denoiser cluster mapping file [REQUIRED]"/>
  <param name="otu_picker_map_file" type="data" format="tabular" label="otu_picker_map_file"
   help="path to OTU mapping file from OTU picker [REQUIRED]"/>
  <param name="fasta_fp" type="data" format="fasta" label="fasta_fp"
   help="path to FASTA file, output of split_libraries.py [REQUIRED]"/>
  <param name="denoised_fasta_fp" type="data" format="fasta" label="denoised_fasta_fp"
   help="path to denoised fasta file [REQUIRED]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>