Mercurial > repos > jjohnson > qiime
view beta_significance.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Sun, 17 Jul 2011 10:30:11 -0500 |
parents | |
children |
line wrap: on
line source
<tool id="beta_significance" name="beta_significance" version="1.2.0"> <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description> <requirements> <requirement type="binary">beta_significance.py</requirement> </requirements> <command interpreter="python"> qiime_wrapper.py --galaxy_tmpdir='$__new_file_path__' beta_significance.py --input_path=$input_path --output_path=$output_path --significance_test=$significance_test --tree_path=$tree_path --num_iters=$num_iters </command> <inputs> <param name="input_path" type="text" label="input_path" help="input otu table [REQUIRED]"/> <param name="significance_test" type="text" label="significance_test" help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/> <param name="tree_path" type="text" label="tree_path" help="path to newick tree file, required for phylogenetic metrics [default: %default]"/> <param name="num_iters" type="integer" value="100" label="num_iters" help="number of monte carlo randomizations [default: 100]"/> </inputs> <outputs> <data format="txt" name="output_path"/> </outputs> <tests> </tests> <help> </help> </tool>