query_tabular: query_tabular.xml annotate

annotate query_tabular.xml @ 6:03842a4f71c6 draft

Uploaded

author	jjohnson
date	Fri, 17 Feb 2017 15:20:24 -0500
parents	19ae309ec53c
children	ae27dab228b8

rev	line source
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	1 <tool id="query_tabular" name="Query Tabular" version="2.0.0">
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	2 <description>using sqlite sql</description>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	3
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	4 <requirements>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	5 </requirements>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	6 <stdio>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	7 <exit_code range="1:" />
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	8 </stdio>
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	9 <command><![CDATA[
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	10 #if $add_to_database.withdb:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	11 #if $save_db:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	12 cp "$add_to_database.withdb" "$save_db" &&
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	13 #else:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	14 cp "$add_to_database.withdb" "$workdb" &&
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	15 #end if
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	16 #end if
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	17 python $__tool_directory__/query_tabular.py
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	18 #if $save_db
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	19 -s $sqlitedb
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	20 #else
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	21 -s $workdb
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	22 #end if
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	23 -j $table_json
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	24 #if $sqlquery:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	25 -Q "$query_file"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	26 $no_header
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	27 -o $output
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	28 #end if
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	29 && cat $query_file
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	30 && cat $table_json
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	31 ]]></command>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	32 <configfiles>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	33 <configfile name="query_file">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	34 $sqlquery
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	35 </configfile>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	36 <configfile name="table_json">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	37 #import json
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	38 #set $jtbldef = dict()
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	39 #set $jtbls = []
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	40 #set $jtbldef['tables'] = $jtbls
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	41 #for $i,$tbl in enumerate($tables):
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	42 #set $jtbl = dict()
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	43 #set $jtbl['file_path'] = str($tbl.table)
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	44 #if $tbl.tbl_opts.table_name:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	45 #set $tname = str($tbl.tbl_opts.table_name)
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	46 #else
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	47 #set $tname = 't' + str($i + 1)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	48 #end if
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	49 #set $jtbl['table_name'] = $tname
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	50 ## #if $tbl.tbl_opts.sel_cols:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	51 ## #set $jtbl['sel_cols'] = $tbl.tbl_opts.sel_cols el_cols
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	52 ## #end if
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	53 #if $tbl.tbl_opts.pkey_autoincr:
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	54 #set $jtbl['pkey_autoincr'] = str($tbl.tbl_opts.pkey_autoincr)
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	55 #end if
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	56 #if $tbl.tbl_opts.col_names:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	57 #set $col_names = str($tbl.tbl_opts.col_names)
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	58 #if $tbl.tbl_opts.load_named_columns:
3 3e3b3c883bec planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 60d1a49c09f87c1c1ec6fecbe54aa226bdc695a7-dirty jjohnson parents: 2 diff changeset	59 #set $jtbl['load_named_columns'] = True
3e3b3c883bec planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 60d1a49c09f87c1c1ec6fecbe54aa226bdc695a7-dirty jjohnson parents: 2 diff changeset	60 #end if
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	61 #else
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	62 #set $col_names = ''
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	63 #end if
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	64 #set $jtbl['column_names'] = $col_names
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	65 #set $idx_unique = []
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	66 #set $idx_non = []
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	67 #for $idx in $tbl.tbl_opts.indexes:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	68 #if $idx.unique:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	69 #silent $idx_unique.append(str($idx.index_columns))
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	70 #else:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	71 #silent $idx_non.append(str($idx.index_columns))
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	72 #end if
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	73 #end for
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	74 #if len($idx_unique) > 0:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	75 #set $jtbl['unique'] = $idx_unique
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	76 #end if
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	77 #if len($idx_non) > 0:
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	78 #set $jtbl['index'] = $idx_non
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	79 #end if
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	80 #set $input_filters = []
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	81 #for $fi in $tbl.input_opts.linefilters:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	82 #if $fi.filter.filter_type == 'skip':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	83 #if str($tbl.tbl_opts.skip_lines) != '':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	84 #set $jtbl['comment_lines'] = int($fi.filter.skip_lines)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	85 #elif $tbl.table.metadata.comment_lines and $tbl.table.metadata.comment_lines > 0:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	86 #set $jtbl['comment_lines'] = int($tbl.table.metadata.comment_lines)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	87 #end if
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	88 #elif $fi.filter.filter_type == 'comment':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	89 #set $jtbl['comment_char'] = str($fi.filter.comment_char)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	90 #elif $fi.filter.filter_type == 'regex':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	91 #set $filter_dict = dict()
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	92 #set $filter_dict['filter'] = str($fi.filter.filter_type)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	93 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	94 #set $filter_dict['action'] = str($fi.filter.regex_action)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	95 #silent $input_filters.append($filter_dict)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	96 #elif $fi.filter.filter_type == 'replace':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	97 #set $filter_dict = dict()
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	98 #set $filter_dict['filter'] = str($fi.filter.filter_type)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	99 #set $filter_dict['column'] = int(str($fi.filter.column))
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	100 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	101 #set $filter_dict['replace'] = str($fi.filter.regex_replace)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	102 #silent $input_filters.append($filter_dict)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	103 ## #elif $fi.filter.filter_type == 'normalize':
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	104 ## #set $filter_dict = dict()
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	105 ## #set $filter_dict['filter'] = str($fi.filter.filter_type)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	106 ## #set $filter_dict['columns'] = [int(str($ci)) for $ci in str($fi.filter.columns).split(',')]
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	107 ## #set $filter_dict['separator'] = str($fi.filter.separator)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	108 ## #silent $input_filters.append($filter_dict)
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	109 #end if
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	110 #end for
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	111 #if $input_filters:
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	112 #set $jtbl['filters'] = $input_filters
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	113 #end if
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	114 #set $jtbls += [$jtbl]
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	115 #end for
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	116 #echo $json.dumps($jtbldef)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	117 </configfile>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	118 </configfiles>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	119 <inputs>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	120 <param name="workdb" type="hidden" value="workdb.sqlite" label=""/>
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	121 <section name="add_to_database" expanded="false" title="Add tables to an existing database">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	122 <param name="withdb" type="data" format="sqlite" optional="true" label="Add tables to this Database"
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	123 help="Make sure your added table names are not already in this database"/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	124 </section>
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	125 <repeat name="tables" title="Database Table" min="1">
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	126 <param name="table" type="data" format="tabular" label="Tabular Dataset for Table"/>
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	127 <section name="input_opts" expanded="false" title="Filter Dataset Input">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	128 <repeat name="linefilters" title="Filter Tabular Input Lines">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	129 <conditional name="filter">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	130 <param name="filter_type" type="select" label="Filter By">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	131 <option value="skip">skip leading lines</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	132 <option value="comment">comment char</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	133 <option value="regex">by regex expression matching</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	134 <option value="replace">regex replace value in column</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	135 <!--
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	136 <option value="normalize">normalize list columns, replicates row for each item in list</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	137 -->
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	138 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	139 <when value="skip">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	140 <param name="skip_lines" type="integer" value="" min="0" label="Skip lines"
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	141 help="Leave blank to use the comment lines metadata for this dataset" />
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	142 </when>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	143 <when value="comment">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	144 <param name="comment_char" type="text" value="#" label="Comment line starting text">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	145 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	146 </when>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	147 <when value="regex">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	148 <param name="regex_pattern" type="text" value="" label="regex pattern">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	149 <sanitizer sanitize="False"/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	150 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	151 <param name="regex_action" type="select" label="action for regex match">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	152 <option value="exclude_match">exclude line on pattern match</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	153 <option value="include_match">include line on pattern match</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	154 <option value="exclude_find">exclude line if pattern found</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	155 <option value="include_find">include line if pattern found</option>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	156 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	157 </when>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	158 <when value="replace">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	159 <param name="column" type="data_column" data_ref="table" label="Column to replace text"
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	160 help=""/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	161 <param name="regex_pattern" type="text" value="" label="regex pattern">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	162 <sanitizer sanitize="False"/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	163 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	164 <param name="regex_replace" type="text" value="" label="replacement expression">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	165 <sanitizer sanitize="False"/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	166 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	167 </when>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	168 <!--
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	169 <when value="normalize">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	170 <param name="columns" type="data_column" data_ref="table" multiple="True" label="Columns to split"
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	171 help=""/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	172 <param name="separator" type="text" value="," label="List item delimiter in column">
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	173 <sanitizer sanitize="False"/>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	174 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	175 </param>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	176 </when>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	177 -->
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	178 </conditional>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	179 </repeat>
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	180 </section>
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	181 <section name="tbl_opts" expanded="false" title="Table Options">
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	182 <param name="table_name" type="text" value="" optional="true" label="Specify Name for Table">
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	183 <help>By default, tables will be named: t1,t2,...,tn (table names must be unique)</help>
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	184 <validator type="regex" message="Table name should start with a letter and may contain additional letters, digits, and underscores">^[A-Za-z]\w*$</validator>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	185 </param>
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	186 <param name="col_names" type="text" value="" optional="true" label="Specify Column Names">
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	187 <help>By default, table columns will be named: c1,c2,c3,...,cn (column names for a table must be unique)</help>
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	188 <sanitizer sanitize="False"/>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	189 <validator type="regex" message="A List of names separated by commas: Column names should start with a letter and may contain additional letters, digits, and underscores. Otherwise, the name must be eclosed in: double quotes, back quotes, or square brackets.">^([A-Za-z]\w\|"\S+[^,"]"\|`\S+[^,`]`\|[[]\S+[^,"][]])?(,([A-Za-z]\w\|"\S+."\|`\S+[^,`]`\|[[]\S+[^,"][]])?)*$</validator>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	190 </param>
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	191 <param name="load_named_columns" type="boolean" truevalue="load_named_columns" falsevalue="" checked="false" label="Only load the columns you have named into database"/>
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	192 <param name="pkey_autoincr" type="text" value="" optional="true" label="Add an auto increment primary key column with this name"
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	193 help="Only creates this additional column when a name is entered. (This can not be the same name as any of the other columns in this table.)">
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	194 <validator type="regex" message="Column name">^([A-Za-z]\w*)?$</validator>
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	195 </param>
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	196 <repeat name="indexes" title="Table Index">
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	197 <param name="unique" type="boolean" truevalue="yes" falsevalue="no" checked="False" label="This is a unique index"/>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	198 <param name="index_columns" type="text" value="" label="Index on Columns">
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	199 <help>Create an index on the column names: e,g, c1 or c2,c4</help>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	200 <validator type="regex" message="Column name, separated by commes if more than one">^([A-Za-z]\w\|"\S+[^,"]"\|`\S+[^,`]`\|[[]\S+[^,"][]])(,([A-Za-z]\w\|"\S+."\|`\S+[^,`]`\|[[]\S+[^,"][]])?)*$</validator>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	201 </param>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	202 </repeat>
9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	203 </section>
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	204 </repeat>
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	205 <param name="save_db" type="boolean" truevalue="yes" falsevalue="no" checked="false" label="Save the sqlite database in your history"/>
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	206 <param name="sqlquery" type="text" area="true" size="20x80" value="" optional="true" label="SQL Query to generate tabular output">
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	207 <help>By default: tables are named: t1,t2,...,tn and columns in each table: c1,c2,...,cn</help>
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	208 <sanitizer sanitize="False"/>
4 9d73dca48178 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9893037a046e4f4c1e7ba859e05f49378c398cb1-dirty jjohnson parents: 3 diff changeset	209 <validator type="regex" message="">^(?ims)\sselect\s+.\s+from\s+.*$</validator>
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	210 </param>
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	211 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers from tabular output"/>
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	212 </inputs>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	213 <outputs>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	214 <data format="sqlite" name="sqlitedb" label="sqlite db of ${on_string}">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	215 <filter>save_db or not (sqlquery and len(sqlquery) > 0)</filter>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	216 </data>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	217 <data format="tabular" name="output" label="query results on ${on_string}">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	218 <filter>sqlquery and len(sqlquery) > 0</filter>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	219 </data>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	220 </outputs>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	221 <tests>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	222
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	223 <test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	224 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	225 <param name="table" ftype="tabular" value="customers.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	226 <param name="table_name" value="customers"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	227 <param name="col_names" value="CustomerID,FirstName,LastName,Email,DOB,Phone"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	228 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	229 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	230 <param name="table" ftype="tabular" value="sales.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	231 <param name="table_name" value="sales"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	232 <param name="col_names" value="CustomerID,Date,SaleAmount"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	233 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	234 <param name="sqlquery" value="SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales" FROM customers join sales on customers.CustomerID = sales.CustomerID GROUP BY customers.CustomerID ORDER BY TotalSales DESC"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	235 <output name="output" file="sales_results.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	236 </test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	237
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	238 <test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	239 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	240 <param name="table" ftype="tabular" value="customers.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	241 <param name="col_names" value=",FirstName,LastName,,DOB,"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	242 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	243 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	244 <param name="table" ftype="tabular" value="sales.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	245 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	246 <param name="sqlquery" value="SELECT FirstName,LastName,sum(t2.c3) as "TotalSales" FROM t1 join t2 on t1.c1 = t2.c1 GROUP BY t1.c1 ORDER BY TotalSales DESC;"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	247 <output name="output" file="sales_results.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	248 </test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	249
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	250 <test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	251 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	252 <param name="table" ftype="tabular" value="customers.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	253 <param name="col_names" value=",FirstName,LastName,,BirthDate,"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	254 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	255 <param name="sqlquery" value="select FirstName,LastName,re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB" from t1 WHERE re_search('[hp]er',c4)"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	256 <output name="output" file="regex_results.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	257 </test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	258
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	259 <test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	260 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	261 <param name="table" ftype="tabular" value="IEDB.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	262 <param name="table_name" value="iedb"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	263 <param name="col_names" value="ID,allele,seq_num,start,end,length,peptide,method,percentile_rank,ann_ic50,ann_rank,smm_ic50,smm_rank,comblib_sidney2008_score,comblib_sidney2008_rank,netmhcpan_ic50,netmhcpan_rank"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	264 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	265 <repeat name="tables">
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	266 <param name="table" ftype="tabular" value="netMHC_summary.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	267 <param name="table_name" value="mhc_summary"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	268 <param name="col_names" value="pos,peptide,logscore,affinity,Bind_Level,Protein,Allele"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	269 </repeat>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	270 <param name="sqlquery" value="select iedb.ID,iedb.peptide,iedb.start,iedb.end,iedb.percentile_rank,mhc_summary.logscore,mhc_summary.affinity,mhc_summary.Bind_Level from iedb left outer join mhc_summary on iedb.peptide = mhc_summary.peptide order by affinity,Bind_Level"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	271 <output name="output" file="query_results.tsv"/>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	272 </test>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	273
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	274 </tests>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	275 <help><![CDATA[
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	276 =============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	277 Query Tabular
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	278 =============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	279
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	280 Inputs
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	281
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	282 Loads tabular datasets into a SQLite_ data base.
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	283
6 03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	284 An existing SQLite_ data base can be used as input, and any selected tabular datasets will be added as new tables in that data base.
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	285
03842a4f71c6 Uploaded jjohnson parents: 5 diff changeset	286
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	287 Outputs
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	288
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	289 The results of a SQL query are output to the history as a tabular file.
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	290
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	291 The SQLite_ data base can also be saved and output as a dataset in the history.
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	292
5 19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	293 (The SQLite to tabular tool can run additional queries on this database.)
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	294
19ae309ec53c planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 29288f94a382686e263623cf6ddcd235ed5f2310-dirty jjohnson parents: 4 diff changeset	295
0 926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	296 For help in using SQLite_ see: http://www.sqlite.org/docs.html
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	297
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	298 NOTE: input for SQLite dates input field must be in the format: YYYY-MM-DD for example: 2015-09-30
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	299
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	300 See: http://www.sqlite.org/lang_datefunc.html
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	301
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	302 Example
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	303
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	304 Given 2 tabular datasets: customers and sales
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	305
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	306 Dataset customers
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	307
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	308 Table name: "customers"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	309
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	310 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	311
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	312 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	313 #CustomerID FirstName LastName Email DOB Phone
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	314 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	315 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	316 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	317 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	318 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	319 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	320
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	321 Dataset sales
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	322
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	323 Table name: "sales"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	324
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	325 Column names: "CustomerID,Date,SaleAmount"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	326
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	327 ============= ============ ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	328 #CustomerID Date SaleAmount
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	329 ============= ============ ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	330 2 2004-05-06 100.22
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	331 1 2004-05-07 99.95
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	332 3 2004-05-07 122.95
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	333 3 2004-05-13 100.00
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	334 4 2004-05-22 555.55
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	335 ============= ============ ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	336
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	337 The query
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	338
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	339 ::
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	340
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	341 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	342 FROM customers join sales on customers.CustomerID = sales.CustomerID
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	343 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	344
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	345 Produces this tabular output:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	346
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	347 ========== ======== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	348 #FirstName LastName TotalSales
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	349 ========== ======== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	350 James Smith 555.55
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	351 Paula Brown 222.95
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	352 Steven Goldfish 100.22
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	353 John Smith 99.95
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	354 ========== ======== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	355
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	356
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	357 If the optional Table name and Column names inputs are not used, the query would be:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	358
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	359 ::
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	360
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	361 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	362 FROM t1 join t2 on t1.c1 = t2.c1
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	363 GROUP BY t1.c1 ORDER BY TotalSales DESC;
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	364
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	365 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	366
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	367 Column names: ,FirstName,LastName,,BirthDate
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	368
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	369 Results in the following data base table
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	370
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	371 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	372 #c1 FirstName LastName c4 BirthDate c6
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	373 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	374 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	375 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	376 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	377 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	378 =========== ========== ========== ===================== ========== ============
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	379
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	380 Regular_expression_ functions are included for:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	381
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	382 ::
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	383
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	384 matching: re_match('pattern',column)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	385
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	386 SELECT t1.FirstName, t1.LastName
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	387 FROM t1
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	388 WHERE re_match('^.*\.(net\|org)$',c4)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	389
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	390 Results:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	391
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	392 =========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	393 #FirstName LastName
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	394 =========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	395 Steven Goldfish
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	396 Paula Brown
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	397 =========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	398
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	399
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	400 ::
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	401
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	402 searching: re_search('pattern',column)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	403 substituting: re_sub('pattern','replacement,column)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	404
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	405 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	406 FROM t1
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	407 WHERE re_search('[hp]er',c4)
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	408
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	409 Results:
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	410
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	411 =========== ========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	412 #FirstName LastName DOB
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	413 =========== ========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	414 Steven Goldfish 04/04/74
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	415 Paula Brown 24/05/78
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	416 James Smith 20/10/80
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	417 =========== ========== ==========
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	418
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	419 .. _Regular_expression: https://docs.python.org/release/2.7/library/re.html
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	420 .. _SQLite: http://www.sqlite.org/index.html
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	421
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	422 ]]></help>
926c62f7fa09 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: diff changeset	423 </tool>

Mercurial > repos > jjohnson > query_tabular

annotate query_tabular.xml @ 6:03842a4f71c6 draft