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comparison sqlite_to_tabular.xml @ 20:ab27c4bd14b9 draft

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author jjohnson
date Fri, 14 Jul 2017 11:39:27 -0400
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19:9d9ab2c69014 20:ab27c4bd14b9
1 <?xml version="1.0"?>
2 <tool id="sqlite_to_tabular" name="SQLite to tabular" version="5.0.0">
3 <description>for SQL query</description>
4
5 <macros>
6 <import>macros.xml</import>
7 </macros>
8
9 <stdio>
10 <exit_code range="1:" level="fatal" description="Error" />
11 </stdio>
12 <command><![CDATA[
13 python $__tool_directory__/sqlite_to_tabular.py
14 --sqlitedb="$sqlitedb"
15 --query_file="$query_file"
16 $no_header
17 --output="$query_results"
18 ]]></command>
19 <configfiles>
20 <configfile name="query_file">
21 $sqlquery
22 </configfile>
23 </configfiles>
24 <inputs>
25 <param name="sqlitedb" type="data" format="sqlite" label="SQLite Database"/>
26 <param name="sqlquery" type="text" area="True" size="120x20" label="SQL query">
27 <validator type="regex">(?ims)^\s*SELECT\s.*\sFROM\s.*$</validator>
28 <sanitizer sanitize="False"/>
29 </param>
30 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/>
31 </inputs>
32 <outputs>
33 <data name="query_results" format="tabular" />
34 </outputs>
35 <tests>
36 <test>
37 <param name="sqlitedb" ftype="sqlite" value="testdb.sqlite" />
38 <param name="sqlquery" value="SELECT first_name, last_name, age FROM contacts WHERE first_name = 'Sam'" />
39 <output name="query_results">
40 <assert_contents>
41 <has_text text="Smith" />
42 <not_has_text text="Doe" />
43 </assert_contents>
44 </output>
45 </test>
46 </tests>
47 <help><![CDATA[
48 =================
49 SQLite to Tabular
50 =================
51
52 **Inputs**
53
54 An existing SQLite_ data base.
55
56
57 **Outputs**
58
59 The results of a SQL query are output to the history as a tabular file.
60
61
62
63 @QUERY_HELP@
64
65 ]]></help>
66 </tool>