Mercurial > repos > jjohnson > query_tabular

comparison filter_tabular.py @ 22:bed5018e7ae3 draft

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Uploaded
author jjohnson
date Mon, 17 Jul 2017 15:22:04 -0400
parents ab27c4bd14b9
children
comparison
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21:357fe86f245d 22:bed5018e7ae3
27 if options.input is not None: 27 if options.input is not None:
28 try: 28 try:
29 inputPath = os.path.abspath(options.input) 29 inputPath = os.path.abspath(options.input)
30 inputFile = open(inputPath, 'r') 30 inputFile = open(inputPath, 'r')
31 except Exception as e: 31 except Exception as e:
32 print("failed: %s" % e, file=sys.stderr) 32 exit('Error: %s' % (e))
33 exit(3)
34 else: 33 else:
35 inputFile = sys.stdin 34 inputFile = sys.stdin
36 35
37 if options.output is not None: 36 if options.output is not None:
38 try: 37 try:
39 outputPath = os.path.abspath(options.output) 38 outputPath = os.path.abspath(options.output)
40 outputFile = open(outputPath, 'w') 39 outputFile = open(outputPath, 'w')
41 except Exception as e: 40 except Exception as e:
42 print("failed: %s" % e, file=sys.stderr) 41 exit('Error: %s' % (e))
43 exit(3)
44 else: 42 else:
45 outputFile = sys.stdout 43 outputFile = sys.stdout
46 44
47 filters = None 45 filters = None
48 if options.jsonfile: 46 if options.jsonfile:
49 try: 47 try:
50 fh = open(options.jsonfile) 48 fh = open(options.jsonfile)
51 filters = json.load(fh) 49 filters = json.load(fh)
52 except Exception as exc: 50 except Exception as e:
53 print("Error: %s" % exc, file=sys.stderr) 51 exit('Error: %s' % (e))
54 52
55 if options.verbose and filters: 53 if options.verbose and filters:
56 for f in filters: 54 for f in filters:
57 print('%s %s' % (f['filter'], 55 print('%s %s' % (f['filter'],
58 ', '.join( 56 ', '.join(
60 for k in set(f.keys()) - set(['filter'])])), 58 for k in set(f.keys()) - set(['filter'])])),
61 file=sys.stdout) 59 file=sys.stdout)
62 60
63 try: 61 try:
64 filter_file(inputFile, outputFile, filters=filters) 62 filter_file(inputFile, outputFile, filters=filters)
65 except Exception as exc: 63 except Exception as e:
66 print("Error: %s" % exc, file=sys.stderr) 64 exit('Error: %s' % (e))
67 exit(1)
68 65
69 66
70 if __name__ == "__main__": 67 if __name__ == "__main__":
71 __main__() 68 __main__()